Detailed information of SNP:
|
SNP ID:
sf0817331811(Gbrowse)
Chromosome: chr08 Position: 17331811 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 63.42% | 36.58% |
| All Indica | 799 | 40.68% | 59.32% |
| All Japonica | 497 | 93.96% | 6.04% |
| Aus | 67 | 91.04% | 8.96% |
| Indica I | 375 | 45.33% | 54.67% |
| Indica II | 213 | 22.54% | 77.46% |
| Indica Intermediate | 211 | 50.71% | 49.29% |
| Temperate Japonica | 335 | 92.54% | 7.46% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 78.57% | 21.43% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817331811 | C->T | INTERGENIC | None |