Detailed information of SNP:
|
SNP ID:
sf0817353239(Gbrowse)
Chromosome: chr08 Position: 17353239 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1392 | 51.51% | 48.49% |
| All Indica | 780 | 28.85% | 71.15% |
| All Japonica | 491 | 92.26% | 7.74% |
| Aus | 67 | 0.00% | 100.00% |
| Indica I | 367 | 35.97% | 64.03% |
| Indica II | 209 | 22.49% | 77.51% |
| Indica Intermediate | 204 | 22.55% | 77.45% |
| Temperate Japonica | 333 | 90.99% | 9.01% |
| Tropical Japonica | 91 | 96.70% | 3.30% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 65.00% | 35.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817353239 | C->G | LOC_Os08g28439(LOC_Os08g28439.1) | INTRON |