Detailed information of SNP:
|
SNP ID:
sf0817355932(Gbrowse)
Chromosome: chr08 Position: 17355932 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1395 | 91.90% | 8.10% |
| All Indica | 776 | 92.01% | 7.99% |
| All Japonica | 497 | 95.17% | 4.83% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 365 | 92.33% | 7.67% |
| Indica II | 208 | 90.38% | 9.62% |
| Indica Intermediate | 203 | 93.10% | 6.90% |
| Temperate Japonica | 335 | 92.84% | 7.16% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817355932 | T->C | INTERGENIC | None |