Detailed information of SNP:
|
SNP ID:
sf0817356206(Gbrowse)
Chromosome: chr08 Position: 17356206 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1403 | 88.10% | 11.90% |
| All Indica | 783 | 86.46% | 13.54% |
| All Japonica | 497 | 94.57% | 5.43% |
| Aus | 67 | 58.21% | 41.79% |
| Indica I | 369 | 88.62% | 11.38% |
| Indica II | 210 | 85.24% | 14.76% |
| Indica Intermediate | 204 | 83.82% | 16.18% |
| Temperate Japonica | 335 | 92.24% | 7.76% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817356206 | A->G | INTERGENIC | None |