Detailed information of SNP:
|
SNP ID:
sf0817357114(Gbrowse)
Chromosome: chr08 Position: 17357114 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 91.79% | 8.21% |
| All Indica | 781 | 93.21% | 6.79% |
| All Japonica | 497 | 93.36% | 6.64% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 363 | 93.39% | 6.61% |
| Indica II | 211 | 92.42% | 7.58% |
| Indica Intermediate | 207 | 93.72% | 6.28% |
| Temperate Japonica | 335 | 91.94% | 8.06% |
| Tropical Japonica | 94 | 96.81% | 3.19% |
| Japonica Intermediate | 68 | 95.59% | 4.41% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 92.68% | 7.32% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817357114 | C->T | LOC_Os08g28450(LOC_Os08g28450.1) | Non-Synonymous SNP |