Detailed information of SNP:
|
SNP ID:
sf0817359300(Gbrowse)
Chromosome: chr08 Position: 17359300 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1417 | 92.03% | 7.97% |
| All Indica | 798 | 92.73% | 7.27% |
| All Japonica | 497 | 94.77% | 5.23% |
| Aus | 67 | 61.19% | 38.81% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 212 | 90.09% | 9.91% |
| Indica Intermediate | 211 | 93.84% | 6.16% |
| Temperate Japonica | 335 | 92.84% | 7.16% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817359300 | C->G | LOC_Os08g28450(LOC_Os08g28450.1) | INTRON |