Detailed information of SNP:
|
SNP ID:
sf0817359547(Gbrowse)
Chromosome: chr08 Position: 17359547 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1416 | 93.36% | 6.64% |
| All Indica | 796 | 94.60% | 5.40% |
| All Japonica | 497 | 95.17% | 4.83% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 375 | 95.20% | 4.80% |
| Indica II | 211 | 91.94% | 8.06% |
| Indica Intermediate | 210 | 96.19% | 3.81% |
| Temperate Japonica | 335 | 92.84% | 7.16% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817359547 | G->A | LOC_Os08g28450(LOC_Os08g28450.1) | Synonymous |