Detailed information of SNP:
|
SNP ID:
sf0817364192(Gbrowse)
Chromosome: chr08 Position: 17364192 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1419 | 57.93% | 42.07% |
| All Indica | 799 | 93.62% | 6.38% |
| All Japonica | 497 | 2.21% | 97.79% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 95.73% | 4.27% |
| Temperate Japonica | 335 | 1.19% | 98.81% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817364192 | A->C | INTERGENIC | None |