Detailed information of SNP:
|
SNP ID:
sf0817365999(Gbrowse)
Chromosome: chr08 Position: 17365999 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 54.44% | 45.56% |
| All Indica | 798 | 87.84% | 12.16% |
| All Japonica | 497 | 2.01% | 97.99% |
| Aus | 67 | 64.18% | 35.82% |
| Indica I | 374 | 89.04% | 10.96% |
| Indica II | 213 | 88.26% | 11.74% |
| Indica Intermediate | 211 | 85.31% | 14.69% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 3.19% | 96.81% |
| Japonica Intermediate | 68 | 5.88% | 94.12% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 42.86% | 57.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817365999 | G->A | LOC_Os08g28460(LOC_Os08g28460.1) | INTRON |