Detailed information of SNP:
|
SNP ID:
sf0817377545(Gbrowse)
Chromosome: chr08 Position: 17377545 |
Major allele:
T
Minor allele: C Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1415 | 54.63% | 45.37% |
| All Indica | 796 | 92.46% | 7.54% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 66 | 13.64% | 86.36% |
| Indica I | 373 | 93.57% | 6.43% |
| Indica II | 212 | 88.68% | 11.32% |
| Indica Intermediate | 211 | 94.31% | 5.69% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817377545 | C->T | LOC_Os08g28470(LOC_Os08g28470.1) | Non-Synonymous SNP |