Detailed information of SNP:
|
SNP ID:
sf0817377769(Gbrowse)
Chromosome: chr08 Position: 17377769 |
Major allele:
C
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 55.22% | 44.78% |
| All Indica | 798 | 93.23% | 6.77% |
| All Japonica | 497 | 1.61% | 98.39% |
| Aus | 67 | 16.42% | 83.58% |
| Indica I | 374 | 93.85% | 6.15% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 211 | 95.26% | 4.74% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 2.13% | 97.87% |
| Japonica Intermediate | 68 | 4.41% | 95.59% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 47.62% | 52.38% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817377769 | G->C | LOC_Os08g28470(LOC_Os08g28470.1) | Synonymous |