Detailed information of SNP:
|
SNP ID:
sf0817394829(Gbrowse)
Chromosome: chr08 Position: 17394829 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1330 | 61.95% | 38.05% |
| All Indica | 718 | 46.66% | 53.34% |
| All Japonica | 496 | 90.73% | 9.27% |
| Aus | 62 | 3.23% | 96.77% |
| Indica I | 331 | 46.22% | 53.78% |
| Indica II | 193 | 49.74% | 50.26% |
| Indica Intermediate | 194 | 44.33% | 55.67% |
| Temperate Japonica | 335 | 91.04% | 8.96% |
| Tropical Japonica | 94 | 89.36% | 10.64% |
| Japonica Intermediate | 67 | 91.04% | 8.96% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 60.00% | 40.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817394829 | A->G | LOC_Os08g28500(LOC_Os08g28500.1) | Non-Synonymous SNP |