Detailed information of SNP:
|
SNP ID:
sf0817395980(Gbrowse)
Chromosome: chr08 Position: 17395980 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1398 | 79.61% | 20.39% |
| All Indica | 779 | 73.43% | 26.57% |
| All Japonica | 497 | 98.99% | 1.01% |
| Aus | 67 | 10.45% | 89.55% |
| Indica I | 363 | 88.15% | 11.85% |
| Indica II | 211 | 58.77% | 41.23% |
| Indica Intermediate | 205 | 62.44% | 37.56% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 68.29% | 31.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817395980 | T->C | LOC_Os08g28500(LOC_Os08g28500.1) | INTRON |