Detailed information of SNP:
|
SNP ID:
sf0817397864(Gbrowse)
Chromosome: chr08 Position: 17397864 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1333 | 92.95% | 7.05% |
| All Indica | 786 | 100.00% | 0.00% |
| All Japonica | 424 | 78.54% | 21.46% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 372 | 100.00% | 0.00% |
| Indica II | 211 | 100.00% | 0.00% |
| Indica Intermediate | 203 | 100.00% | 0.00% |
| Temperate Japonica | 293 | 69.28% | 30.72% |
| Tropical Japonica | 75 | 100.00% | 0.00% |
| Japonica Intermediate | 56 | 98.21% | 1.79% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817397864 | T->A | LOC_Os08g28500(LOC_Os08g28500.1) | INTRON |