Detailed information of SNP:
|
SNP ID:
sf0817429104(Gbrowse)
Chromosome: chr08 Position: 17429104 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1417 | 64.57% | 35.43% |
| All Indica | 797 | 48.56% | 51.44% |
| All Japonica | 497 | 98.19% | 1.81% |
| Aus | 67 | 2.99% | 97.01% |
| Indica I | 375 | 70.93% | 29.07% |
| Indica II | 212 | 10.85% | 89.15% |
| Indica Intermediate | 210 | 46.67% | 53.33% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 97.87% | 2.13% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 57.14% | 42.86% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817429104 | A->T | INTERGENIC | None |