Detailed information of SNP:
|
SNP ID:
sf0817459116(Gbrowse)
Chromosome: chr08 Position: 17459116 |
Major allele:
C
Minor allele: G Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1406 | 78.81% | 21.19% |
| All Indica | 792 | 64.90% | 35.10% |
| All Japonica | 494 | 97.17% | 2.83% |
| Aus | 64 | 96.88% | 3.12% |
| Indica I | 372 | 56.18% | 43.82% |
| Indica II | 211 | 80.09% | 19.91% |
| Indica Intermediate | 209 | 65.07% | 34.93% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 93 | 91.40% | 8.60% |
| Japonica Intermediate | 66 | 90.91% | 9.09% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817459116 | C->G | INTERGENIC | None |