Detailed information of SNP:
|
SNP ID:
sf0817462576(Gbrowse)
Chromosome: chr08 Position: 17462576 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1394 | 86.51% | 13.49% |
| All Indica | 777 | 79.15% | 20.85% |
| All Japonica | 496 | 96.77% | 3.23% |
| Aus | 65 | 89.23% | 10.77% |
| Indica I | 368 | 85.05% | 14.95% |
| Indica II | 206 | 72.33% | 27.67% |
| Indica Intermediate | 203 | 75.37% | 24.63% |
| Temperate Japonica | 335 | 98.81% | 1.19% |
| Tropical Japonica | 93 | 91.40% | 8.60% |
| Japonica Intermediate | 68 | 94.12% | 5.88% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817462576 | C->T | INTERGENIC | None |