Detailed information of SNP:
|
SNP ID:
sf0817486518(Gbrowse)
Chromosome: chr08 Position: 17486518 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1398 | 97.85% | 2.15% |
| All Indica | 799 | 100.00% | 0.00% |
| All Japonica | 477 | 93.92% | 6.08% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 323 | 92.88% | 7.12% |
| Tropical Japonica | 90 | 100.00% | 0.00% |
| Japonica Intermediate | 64 | 90.62% | 9.38% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817486518 | A->T | INTERGENIC | None |