Detailed information of SNP:
|
SNP ID:
sf0817488264(Gbrowse)
Chromosome: chr08 Position: 17488264 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1382 | 65.48% | 34.52% |
| All Indica | 768 | 48.44% | 51.56% |
| All Japonica | 496 | 95.36% | 4.64% |
| Aus | 64 | 25.00% | 75.00% |
| Indica I | 357 | 39.22% | 60.78% |
| Indica II | 206 | 65.05% | 34.95% |
| Indica Intermediate | 205 | 47.80% | 52.20% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 86.02% | 13.98% |
| Japonica Intermediate | 68 | 88.24% | 11.76% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 75.00% | 25.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817488264 | T->G | LOC_Os08g28630(LOC_Os08g28630.1) | Non-Synonymous SNP |