Detailed information of SNP:
|
SNP ID:
sf0817491447(Gbrowse)
Chromosome: chr08 Position: 17491447 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1238 | 92.57% | 7.43% |
| All Indica | 623 | 96.47% | 3.53% |
| All Japonica | 495 | 93.94% | 6.06% |
| Aus | 67 | 43.28% | 56.72% |
| Indica I | 255 | 96.86% | 3.14% |
| Indica II | 201 | 95.52% | 4.48% |
| Indica Intermediate | 167 | 97.01% | 2.99% |
| Temperate Japonica | 334 | 94.31% | 5.69% |
| Tropical Japonica | 94 | 93.62% | 6.38% |
| Japonica Intermediate | 67 | 92.54% | 7.46% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 39 | 94.87% | 5.13% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817491447 | A->G | LOC_Os08g28630(LOC_Os08g28630.1) | Synonymous |