Detailed information of SNP:
|
SNP ID:
sf0817493044(Gbrowse)
Chromosome: chr08 Position: 17493044 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1410 | 95.39% | 4.61% |
| All Indica | 791 | 94.06% | 5.94% |
| All Japonica | 496 | 97.58% | 2.42% |
| Aus | 67 | 95.52% | 4.48% |
| Indica I | 372 | 97.85% | 2.15% |
| Indica II | 210 | 91.43% | 8.57% |
| Indica Intermediate | 209 | 89.95% | 10.05% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 93 | 93.55% | 6.45% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 92.86% | 7.14% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817493044 | T->C | LOC_Os08g28630(LOC_Os08g28630.1) | Synonymous |