Detailed information of SNP:
|
SNP ID:
sf0817493539(Gbrowse)
Chromosome: chr08 Position: 17493539 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1400 | 96.93% | 3.07% |
| All Indica | 783 | 96.17% | 3.83% |
| All Japonica | 495 | 98.18% | 1.82% |
| Aus | 66 | 96.97% | 3.03% |
| Indica I | 371 | 98.38% | 1.62% |
| Indica II | 209 | 93.30% | 6.70% |
| Indica Intermediate | 203 | 95.07% | 4.93% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 92 | 91.30% | 8.70% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 95.24% | 4.76% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817493539 | C->T | LOC_Os08g28630(LOC_Os08g28630.1) | Synonymous |