Detailed information of SNP:
|
SNP ID:
sf0817493929(Gbrowse)
Chromosome: chr08 Position: 17493929 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1411 | 98.16% | 1.84% |
| All Indica | 793 | 97.60% | 2.40% |
| All Japonica | 495 | 98.79% | 1.21% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 373 | 99.46% | 0.54% |
| Indica II | 209 | 94.74% | 5.26% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 92 | 96.74% | 3.26% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817493929 | G->A | LOC_Os08g28630(LOC_Os08g28630.1) | Synonymous |