Detailed information of SNP:
|
SNP ID:
sf0817497720(Gbrowse)
Chromosome: chr08 Position: 17497720 |
Major allele:
G
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1330 | 52.26% | 47.74% |
| All Indica | 723 | 83.26% | 16.74% |
| All Japonica | 489 | 5.52% | 94.48% |
| Aus | 65 | 76.92% | 23.08% |
| Indica I | 348 | 89.08% | 10.92% |
| Indica II | 186 | 73.12% | 26.88% |
| Indica Intermediate | 189 | 82.54% | 17.46% |
| Temperate Japonica | 332 | 0.60% | 99.40% |
| Tropical Japonica | 91 | 18.68% | 81.32% |
| Japonica Intermediate | 66 | 12.12% | 87.88% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 39 | 41.03% | 58.97% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817497720 | A->G | INTERGENIC | None |