Detailed information of SNP:
|
SNP ID:
sf0817548701(Gbrowse)
Chromosome: chr08 Position: 17548701 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 93.51% | 6.49% |
| All Indica | 799 | 97.00% | 3.00% |
| All Japonica | 497 | 90.14% | 9.86% |
| Aus | 67 | 80.60% | 19.40% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 213 | 96.71% | 3.29% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 57.45% | 42.55% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 85.37% | 14.63% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817548701 | G->A | INTERGENIC | None |