Detailed information of SNP:
|
SNP ID:
sf0817554456(Gbrowse)
Chromosome: chr08 Position: 17554456 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1414 | 73.34% | 26.66% |
| All Indica | 794 | 60.71% | 39.29% |
| All Japonica | 497 | 91.15% | 8.85% |
| Aus | 67 | 76.12% | 23.88% |
| Indica I | 373 | 37.00% | 63.00% |
| Indica II | 212 | 91.51% | 8.49% |
| Indica Intermediate | 209 | 71.77% | 28.23% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 69.15% | 30.85% |
| Japonica Intermediate | 68 | 80.88% | 19.12% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817554456 | C->T | INTERGENIC | None |