Detailed information of SNP:
|
SNP ID:
sf0817554793(Gbrowse)
Chromosome: chr08 Position: 17554793 |
Major allele:
A
Minor allele: T Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1375 | 92.15% | 7.85% |
| All Indica | 756 | 85.85% | 14.15% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 353 | 74.79% | 25.21% |
| Indica II | 208 | 97.60% | 2.40% |
| Indica Intermediate | 195 | 93.33% | 6.67% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817554793 | A->T | INTERGENIC | None |