Detailed information of SNP:
|
SNP ID:
sf0817555815(Gbrowse)
Chromosome: chr08 Position: 17555815 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1418 | 90.83% | 9.17% |
| All Indica | 799 | 96.75% | 3.25% |
| All Japonica | 497 | 89.94% | 10.06% |
| Aus | 66 | 25.76% | 74.24% |
| Indica I | 375 | 95.73% | 4.27% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 97.63% | 2.37% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 56.38% | 43.62% |
| Japonica Intermediate | 68 | 89.71% | 10.29% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817555815 | G->A | LOC_Os08g28710(LOC_Os08g28710.1) | UTR_3_PRIME |