Detailed information of SNP:



SNP ID: sf0817555815(Gbrowse)

Chromosome: chr08

Position: 17555815
Major allele: G

Minor allele: A

Reference allele: G

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of G(major allele)Frequency of A(minor allele)
All1418 90.83% 9.17%
All Indica799 96.75% 3.25%
All Japonica497 89.94% 10.06%
Aus66 25.76% 74.24%
Indica I375 95.73% 4.27%
Indica II213 97.65% 2.35%
Indica Intermediate211 97.63% 2.37%
Temperate Japonica335 99.40% 0.60%
Tropical Japonica94 56.38% 43.62%
Japonica Intermediate68 89.71% 10.29%
Group VI/Aromatic14 100.00% 0.00%
Intermediate42 88.10% 11.90%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0817555815 G->A LOC_Os08g28710(LOC_Os08g28710.1) UTR_3_PRIME