Detailed information of SNP:
|
SNP ID:
sf0817586451(Gbrowse)
Chromosome: chr08 Position: 17586451 |
Major allele:
G
Minor allele: A Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1414 | 96.46% | 3.54% |
| All Indica | 799 | 98.62% | 1.38% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 62 | 48.39% | 51.61% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817586451 | G->A | LOC_Os08g28750(LOC_Os08g28750.1) | Non-Synonymous SNP |