Detailed information of SNP:
|
SNP ID:
sf0817609727(Gbrowse)
Chromosome: chr08 Position: 17609727 |
Major allele:
A
Minor allele: G Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 59.69% | 40.31% |
| All Indica | 799 | 93.24% | 6.76% |
| All Japonica | 497 | 11.27% | 88.73% |
| Aus | 67 | 37.31% | 62.69% |
| Indica I | 375 | 96.80% | 3.20% |
| Indica II | 213 | 90.14% | 9.86% |
| Indica Intermediate | 211 | 90.05% | 9.95% |
| Temperate Japonica | 335 | 0.90% | 99.10% |
| Tropical Japonica | 94 | 40.43% | 59.57% |
| Japonica Intermediate | 68 | 22.06% | 77.94% |
| Group VI/Aromatic | 14 | 0.00% | 100.00% |
| Intermediate | 42 | 50.00% | 50.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817609727 | G->A | INTERGENIC | None |