Detailed information of SNP:
|
SNP ID:
sf0817617065(Gbrowse)
Chromosome: chr08 Position: 17617065 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 82.24% | 17.76% |
| All Indica | 799 | 78.60% | 21.40% |
| All Japonica | 497 | 89.74% | 10.26% |
| Aus | 67 | 62.69% | 37.31% |
| Indica I | 375 | 67.20% | 32.80% |
| Indica II | 213 | 94.84% | 5.16% |
| Indica Intermediate | 211 | 82.46% | 17.54% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 61.70% | 38.30% |
| Japonica Intermediate | 68 | 82.35% | 17.65% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 88.10% | 11.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817617065 | C->T | INTERGENIC | None |