Detailed information of SNP:
|
SNP ID:
sf0817658955(Gbrowse)
Chromosome: chr08 Position: 17658955 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1397 | 95.28% | 4.72% |
| All Indica | 799 | 99.87% | 0.13% |
| All Japonica | 475 | 87.16% | 12.84% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 375 | 100.00% | 0.00% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 99.53% | 0.47% |
| Temperate Japonica | 334 | 99.10% | 0.90% |
| Tropical Japonica | 76 | 40.79% | 59.21% |
| Japonica Intermediate | 65 | 80.00% | 20.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817658955 | T->C | INTERGENIC | None |