Detailed information of SNP:
|
SNP ID:
sf0817673707(Gbrowse)
Chromosome: chr08 Position: 17673707 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1418 | 71.02% | 28.98% |
| All Indica | 798 | 56.89% | 43.11% |
| All Japonica | 497 | 89.13% | 10.87% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 374 | 75.94% | 24.06% |
| Indica II | 213 | 19.25% | 80.75% |
| Indica Intermediate | 211 | 61.14% | 38.86% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 94 | 62.77% | 37.23% |
| Japonica Intermediate | 68 | 76.47% | 23.53% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817673707 | A->G | INTERGENIC | None |