Detailed information of SNP:
|
SNP ID:
sf0817674368(Gbrowse)
Chromosome: chr08 Position: 17674368 |
Major allele:
G
Minor allele: T Reference allele: G |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1387 | 73.11% | 26.89% |
| All Indica | 768 | 59.77% | 40.23% |
| All Japonica | 496 | 89.72% | 10.28% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 367 | 78.20% | 21.80% |
| Indica II | 198 | 20.71% | 79.29% |
| Indica Intermediate | 203 | 64.53% | 35.47% |
| Temperate Japonica | 335 | 99.10% | 0.90% |
| Tropical Japonica | 93 | 63.44% | 36.56% |
| Japonica Intermediate | 68 | 79.41% | 20.59% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 69.05% | 30.95% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817674368 | G->T | INTERGENIC | None |