Detailed information of SNP:
|
SNP ID:
sf0817695309(Gbrowse)
Chromosome: chr08 Position: 17695309 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1414 | 95.33% | 4.67% |
| All Indica | 797 | 98.24% | 1.76% |
| All Japonica | 497 | 100.00% | 0.00% |
| Aus | 64 | 28.12% | 71.88% |
| Indica I | 375 | 99.73% | 0.27% |
| Indica II | 212 | 94.81% | 5.19% |
| Indica Intermediate | 210 | 99.05% | 0.95% |
| Temperate Japonica | 335 | 100.00% | 0.00% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817695309 | T->C | INTERGENIC | None |