Detailed information of SNP:
|
SNP ID:
sf0817745871(Gbrowse)
Chromosome: chr08 Position: 17745871 |
Major allele:
T
Minor allele: A Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1311 | 62.01% | 37.99% |
| All Indica | 715 | 43.92% | 56.08% |
| All Japonica | 482 | 96.27% | 3.73% |
| Aus | 64 | 6.25% | 93.75% |
| Indica I | 323 | 48.30% | 51.70% |
| Indica II | 197 | 40.10% | 59.90% |
| Indica Intermediate | 195 | 40.51% | 59.49% |
| Temperate Japonica | 331 | 99.40% | 0.60% |
| Tropical Japonica | 86 | 83.72% | 16.28% |
| Japonica Intermediate | 65 | 96.92% | 3.08% |
| Group VI/Aromatic | 11 | 63.64% | 36.36% |
| Intermediate | 39 | 61.54% | 38.46% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817745871 | T->A | INTERGENIC | None |