Detailed information of SNP:
|
SNP ID:
sf0817765873(Gbrowse)
Chromosome: chr08 Position: 17765873 |
Major allele:
C
Minor allele: A Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of A(minor allele) |
|---|---|---|---|
| All | 1363 | 63.46% | 36.54% |
| All Indica | 755 | 79.34% | 20.66% |
| All Japonica | 490 | 33.06% | 66.94% |
| Aus | 64 | 98.44% | 1.56% |
| Indica I | 357 | 83.19% | 16.81% |
| Indica II | 194 | 74.74% | 25.26% |
| Indica Intermediate | 204 | 76.96% | 23.04% |
| Temperate Japonica | 335 | 23.88% | 76.12% |
| Tropical Japonica | 89 | 47.19% | 52.81% |
| Japonica Intermediate | 66 | 60.61% | 39.39% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 40 | 70.00% | 30.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817765873 | A->C | LOC_Os08g29020(LOC_Os08g29020.1) | UTR_3_PRIME |