Detailed information of SNP:
|
SNP ID:
sf0817787684(Gbrowse)
Chromosome: chr08 Position: 17787684 |
Major allele:
G
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of G(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1262 | 51.90% | 48.10% |
| All Indica | 655 | 82.75% | 17.25% |
| All Japonica | 488 | 5.12% | 94.88% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 317 | 81.70% | 18.30% |
| Indica II | 179 | 86.59% | 13.41% |
| Indica Intermediate | 159 | 80.50% | 19.50% |
| Temperate Japonica | 335 | 0.30% | 99.70% |
| Tropical Japonica | 86 | 26.74% | 73.26% |
| Japonica Intermediate | 67 | 1.49% | 98.51% |
| Group VI/Aromatic | 14 | 7.14% | 92.86% |
| Intermediate | 41 | 56.10% | 43.90% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817787684 | T->G | INTERGENIC | None |