Detailed information of SNP:
|
SNP ID:
sf0817793586(Gbrowse)
Chromosome: chr08 Position: 17793586 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1406 | 96.51% | 3.49% |
| All Indica | 786 | 95.42% | 4.58% |
| All Japonica | 497 | 97.79% | 2.21% |
| Aus | 67 | 100.00% | 0.00% |
| Indica I | 370 | 95.68% | 4.32% |
| Indica II | 208 | 94.23% | 5.77% |
| Indica Intermediate | 208 | 96.15% | 3.85% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 94 | 91.49% | 8.51% |
| Japonica Intermediate | 68 | 98.53% | 1.47% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817793586 | C->T | INTERGENIC | None |