Detailed information of SNP:
|
SNP ID:
sf0817803067(Gbrowse)
Chromosome: chr08 Position: 17803067 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1402 | 97.08% | 2.92% |
| All Indica | 790 | 96.96% | 3.04% |
| All Japonica | 489 | 98.36% | 1.64% |
| Aus | 67 | 98.51% | 1.49% |
| Indica I | 374 | 98.13% | 1.87% |
| Indica II | 210 | 93.81% | 6.19% |
| Indica Intermediate | 206 | 98.06% | 1.94% |
| Temperate Japonica | 331 | 99.70% | 0.30% |
| Tropical Japonica | 91 | 93.41% | 6.59% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 42 | 85.71% | 14.29% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817803067 | C->T | LOC_Os08g29080(LOC_Os08g29080.1) | Non-Synonymous SNP |