Detailed information of SNP:
|
SNP ID:
sf0817803428(Gbrowse)
Chromosome: chr08 Position: 17803428 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1379 | 67.37% | 32.63% |
| All Indica | 769 | 47.20% | 52.80% |
| All Japonica | 489 | 94.07% | 5.93% |
| Aus | 66 | 93.94% | 6.06% |
| Indica I | 366 | 44.54% | 55.46% |
| Indica II | 206 | 47.57% | 52.43% |
| Indica Intermediate | 197 | 51.78% | 48.22% |
| Temperate Japonica | 332 | 97.59% | 2.41% |
| Tropical Japonica | 91 | 84.62% | 15.38% |
| Japonica Intermediate | 66 | 89.39% | 10.61% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 73.17% | 26.83% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817803428 | C->T | LOC_Os08g29080(LOC_Os08g29080.1) | Non-Synonymous SNP |