Detailed information of SNP:
|
SNP ID:
sf0817804265(Gbrowse)
Chromosome: chr08 Position: 17804265 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1413 | 90.52% | 9.48% |
| All Indica | 795 | 92.70% | 7.30% |
| All Japonica | 497 | 96.98% | 3.02% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 373 | 93.30% | 6.70% |
| Indica II | 212 | 88.68% | 11.32% |
| Indica Intermediate | 210 | 95.71% | 4.29% |
| Temperate Japonica | 335 | 97.61% | 2.39% |
| Tropical Japonica | 94 | 94.68% | 5.32% |
| Japonica Intermediate | 68 | 97.06% | 2.94% |
| Group VI/Aromatic | 12 | 91.67% | 8.33% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817804265 | A->G | INTERGENIC | None |