Detailed information of SNP:
|
SNP ID:
sf0817804276(Gbrowse)
Chromosome: chr08 Position: 17804276 |
Major allele:
T
Minor allele: G Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1373 | 61.69% | 38.31% |
| All Indica | 762 | 39.63% | 60.37% |
| All Japonica | 491 | 91.65% | 8.35% |
| Aus | 65 | 87.69% | 12.31% |
| Indica I | 358 | 37.15% | 62.85% |
| Indica II | 201 | 40.30% | 59.70% |
| Indica Intermediate | 203 | 43.35% | 56.65% |
| Temperate Japonica | 335 | 96.42% | 3.58% |
| Tropical Japonica | 88 | 77.27% | 22.73% |
| Japonica Intermediate | 68 | 86.76% | 13.24% |
| Group VI/Aromatic | 14 | 85.71% | 14.29% |
| Intermediate | 41 | 63.41% | 36.59% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817804276 | T->G | INTERGENIC | None |