Detailed information of SNP:
|
SNP ID:
sf0817814091(Gbrowse)
Chromosome: chr08 Position: 17814091 |
Major allele:
A
Minor allele: T Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1419 | 72.94% | 27.06% |
| All Indica | 799 | 95.99% | 4.01% |
| All Japonica | 497 | 43.06% | 56.94% |
| Aus | 67 | 20.90% | 79.10% |
| Indica I | 375 | 97.33% | 2.67% |
| Indica II | 213 | 91.55% | 8.45% |
| Indica Intermediate | 211 | 98.10% | 1.90% |
| Temperate Japonica | 335 | 25.07% | 74.93% |
| Tropical Japonica | 94 | 84.04% | 15.96% |
| Japonica Intermediate | 68 | 75.00% | 25.00% |
| Group VI/Aromatic | 14 | 92.86% | 7.14% |
| Intermediate | 42 | 64.29% | 35.71% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817814091 | T->A | LOC_Os08g29100(LOC_Os08g29100.1) | INTRON |