Detailed information of SNP:
|
SNP ID:
sf0817826456(Gbrowse)
Chromosome: chr08 Position: 17826456 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1409 | 97.02% | 2.98% |
| All Indica | 797 | 99.87% | 0.13% |
| All Japonica | 493 | 92.09% | 7.91% |
| Aus | 64 | 100.00% | 0.00% |
| Indica I | 373 | 99.73% | 0.27% |
| Indica II | 213 | 100.00% | 0.00% |
| Indica Intermediate | 211 | 100.00% | 0.00% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 91 | 70.33% | 29.67% |
| Japonica Intermediate | 67 | 85.07% | 14.93% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 95.12% | 4.88% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817826456 | C->T | LOC_Os08g29124(LOC_Os08g29124.1) | Non-Synonymous SNP |