Detailed information of SNP:
|
SNP ID:
sf0817851128(Gbrowse)
Chromosome: chr08 Position: 17851128 |
Major allele:
A
Minor allele: G Reference allele: A |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of A(major allele) | Frequency of G(minor allele) |
|---|---|---|---|
| All | 1419 | 79.92% | 20.08% |
| All Indica | 799 | 78.35% | 21.65% |
| All Japonica | 497 | 80.89% | 19.11% |
| Aus | 67 | 85.07% | 14.93% |
| Indica I | 375 | 60.27% | 39.73% |
| Indica II | 213 | 98.12% | 1.88% |
| Indica Intermediate | 211 | 90.52% | 9.48% |
| Temperate Japonica | 335 | 98.51% | 1.49% |
| Tropical Japonica | 94 | 24.47% | 75.53% |
| Japonica Intermediate | 68 | 72.06% | 27.94% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 83.33% | 16.67% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817851128 | A->G | LOC_Os08g29160(LOC_Os08g29160.1) | INTRON |