Detailed information of SNP:



SNP ID: sf0817963102(Gbrowse)

Chromosome: chr08

Position: 17963102
Major allele: C

Minor allele: T

Reference allele: C

Allele Frequencies:


NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.


PopulationsPopulation SizeFrequency of C(major allele)Frequency of T(minor allele)
All1367 96.20% 3.80%
All Indica771 94.94% 5.06%
All Japonica480 98.12% 1.88%
Aus62 96.77% 3.23%
Indica I363 95.87% 4.13%
Indica II202 91.58% 8.42%
Indica Intermediate206 96.60% 3.40%
Temperate Japonica335 99.70% 0.30%
Tropical Japonica79 94.94% 5.06%
Japonica Intermediate66 93.94% 6.06%
Group VI/Aromatic14 100.00% 0.00%
Intermediate40 95.00% 5.00%

Allele Var Effect:


SNP ID Var Gene Effect/Location
sf0817963102 C->T INTERGENIC None