Detailed information of SNP:
|
SNP ID:
sf0817963102(Gbrowse)
Chromosome: chr08 Position: 17963102 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1367 | 96.20% | 3.80% |
| All Indica | 771 | 94.94% | 5.06% |
| All Japonica | 480 | 98.12% | 1.88% |
| Aus | 62 | 96.77% | 3.23% |
| Indica I | 363 | 95.87% | 4.13% |
| Indica II | 202 | 91.58% | 8.42% |
| Indica Intermediate | 206 | 96.60% | 3.40% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 79 | 94.94% | 5.06% |
| Japonica Intermediate | 66 | 93.94% | 6.06% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 40 | 95.00% | 5.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817963102 | C->T | INTERGENIC | None |