Detailed information of SNP:
|
SNP ID:
sf0817967384(Gbrowse)
Chromosome: chr08 Position: 17967384 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 96.40% | 3.60% |
| All Indica | 799 | 95.12% | 4.88% |
| All Japonica | 497 | 99.60% | 0.40% |
| Aus | 64 | 84.38% | 15.62% |
| Indica I | 375 | 93.60% | 6.40% |
| Indica II | 213 | 95.77% | 4.23% |
| Indica Intermediate | 211 | 97.16% | 2.84% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 98.94% | 1.06% |
| Japonica Intermediate | 68 | 100.00% | 0.00% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 100.00% | 0.00% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817967384 | C->T | LOC_Os08g29290(LOC_Os08g29290.1) | INTRON |