Detailed information of SNP:
|
SNP ID:
sf0817970987(Gbrowse)
Chromosome: chr08 Position: 17970987 |
Major allele:
C
Minor allele: T Reference allele: C |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of C(major allele) | Frequency of T(minor allele) |
|---|---|---|---|
| All | 1415 | 87.84% | 12.16% |
| All Indica | 797 | 84.07% | 15.93% |
| All Japonica | 495 | 92.12% | 7.88% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 373 | 71.31% | 28.69% |
| Indica II | 213 | 97.65% | 2.35% |
| Indica Intermediate | 211 | 92.89% | 7.11% |
| Temperate Japonica | 335 | 99.40% | 0.60% |
| Tropical Japonica | 93 | 70.97% | 29.03% |
| Japonica Intermediate | 67 | 85.07% | 14.93% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 42 | 90.48% | 9.52% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817970987 | C->T | LOC_Os08g29290(LOC_Os08g29290.1) | Synonymous |