Detailed information of SNP:
|
SNP ID:
sf0817976549(Gbrowse)
Chromosome: chr08 Position: 17976549 |
Major allele:
T
Minor allele: C Reference allele: T |
Allele Frequencies:
NOTE: The detailed information of the classification of populations can be found in the "Notes and Data Evaluation" page.
| Populations | Population Size | Frequency of T(major allele) | Frequency of C(minor allele) |
|---|---|---|---|
| All | 1330 | 95.49% | 4.51% |
| All Indica | 712 | 92.28% | 7.72% |
| All Japonica | 496 | 99.60% | 0.40% |
| Aus | 67 | 97.01% | 2.99% |
| Indica I | 342 | 91.52% | 8.48% |
| Indica II | 187 | 95.72% | 4.28% |
| Indica Intermediate | 183 | 90.16% | 9.84% |
| Temperate Japonica | 335 | 99.70% | 0.30% |
| Tropical Japonica | 94 | 100.00% | 0.00% |
| Japonica Intermediate | 67 | 98.51% | 1.49% |
| Group VI/Aromatic | 14 | 100.00% | 0.00% |
| Intermediate | 41 | 97.56% | 2.44% |
Allele Var Effect:
| SNP ID | Var | Gene | Effect/Location |
|---|---|---|---|
| sf0817976549 | T->C | INTERGENIC | None |